HPC User Guide
Contents
1. What is a cluster?
2. Connecting to the cluster
3. Running Jobs on the HPC
4. Installing and using software
5. Code Version Control
6. Best practices
7. Using Nextflow on HPC
HPC User Guide
»
HPC User Guide documentation
HPC User Guide documentation
¶
Contents
1. What is a cluster?
1.1. Network
1.2. Storage
1.3. Queue manager
1.4. Things to remember…
1.5. Learning to use the shell
2. Connecting to the cluster
2.1. Terminal
2.2. Generate your ssh key
2.3. Request an account
2.4. Connect to the cluster
3. Running Jobs on the HPC
3.1. Interactive jobs
3.2. Batch jobs
3.3. Checking job status
3.4. Cancelling a job
4. Installing and using software
4.1. Why Conda?
4.2. Using Conda in your work
4.3. Configuring Conda Environments
4.4. Searching for packages
4.5. Using environments
4.6. Command reference
4.7. I don’t think I can use Conda because…
4.8. Using graphical interfaces
4.9. Available Modules on the Cluster
5. Code Version Control
5.1. Configuring Git SSH
5.2. Cloning a Repository
6. Best practices
6.1. Structure and document your projects
6.2. Multi-user project
6.3. Use project-specific environments
7. Using Nextflow on HPC
7.1. Launching a Nextflow pipeline